STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEN0013Conserved hypothetical protein. (152 aa)    
Predicted Functional Partners:
SEN0012
Conserved hypothetical protein.
     
 0.942
SEN0014
Conserved hypothetical protein.
     
 0.922
ABB57454.1
Carbon dioxide concentrating mechanism protein.
      
 0.609
ABB57565.1
Possible Rubisco chaperonin.
      
 0.609
ABB56552.1
Hypothetical protein.
      
 0.608
ABB56316.1
Carbon dioxide concentrating mechanism protein CcmK.
      
 0.579
ABB56317.1
Carbon dioxide concentrating mechanism protein CcmK.
      
 0.579
ABB57457.1
Ribulose 1,5-bisphosphate carboxylase small subunit.
      
 0.527
rbcR
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
      
 0.527
ccmO
Carbon dioxide concentrating mechanism protein CcmO; May be involved in the formation of the carboxysome, a polyhedral inclusion where RuBisCO is sequestered; Belongs to the bacterial microcompartments protein family.
      
 0.525
Your Current Organism:
Synechococcus elongatus
NCBI taxonomy Id: 1140
Other names: Anacystis nidulans R2, S. elongatus PCC 7942, Synechococcus elongatus PCC 7942, Synechococcus leopoliensis UTEX 2434, Synechococcus leopoliensis strain PCC 7942, Synechococcus sp. IAM M-200, Synechococcus sp. PCC 7942
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.