STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trxThioredoxin; Belongs to the thioredoxin family. (111 aa)    
Predicted Functional Partners:
ABB56655.1
Thioredoxin reductase.
  
 
 0.847
ABB56920.1
Glutamate synthase (ferredoxin).
    
 
 0.781
ABB58009.1
Membrane protein-like.
       0.702
SEM0037
ATP-binding region, ATPase-like.
   
 
 0.615
irpA
Imelysin. Metallo peptidase. MEROPS family M75; IrpA occurs under iron-deficient growth conditions in cyanobacterium Synechococcus and disappears in cells recovering from iron starvation. It seems to be involved in iron acquisition, uptake or storage.
      
 0.604
ABB58007.1
Proton-translocating NADH-quinone oxidoreductase, chain L.
   
   0.598
ABB57497.1
Heat shock protein DnaJ-like.
   
 
 0.581
gap3
Glyceraldehyde-3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
  
 
 0.558
ABB56521.1
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
      
 0.553
ABB56277.1
Glyceraldehyde-3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
  
 
 0.535
Your Current Organism:
Synechococcus elongatus
NCBI taxonomy Id: 1140
Other names: Anacystis nidulans R2, S. elongatus PCC 7942, Synechococcus elongatus PCC 7942, Synechococcus leopoliensis UTEX 2434, Synechococcus leopoliensis strain PCC 7942, Synechococcus sp. IAM M-200, Synechococcus sp. PCC 7942
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