STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1Y2DFX2Rad4 transglutaminase-like domain-domain-containing protein. (986 aa)    
Predicted Functional Partners:
A0A1Y2EFA9
XPC-binding domain-domain-containing protein.
   
 0.976
A0A1Y2DY76
TFIIH p62 subunit domain-containing protein.
    
 0.963
A0A1Y2EEF2
P-loop containing nucleoside triphosphate hydrolase protein.
   
 0.950
A0A1Y2DTB0
Uncharacterized protein.
    
 0.943
A0A1Y2EJ76
Calmodulin.
    
 0.941
A0A1Y2DYU1
DNA repair helicase.
    
 0.898
A0A1Y2DG12
Uncharacterized protein.
 
      0.872
A0A1Y2DPD9
DNA damage-binding protein CMR1; DNA-binding protein that binds to both single- and double- stranded DNA. Binds preferentially to UV-damaged DNA. May be involved in DNA-metabolic processes.
   
 0.871
A0A1Y2DXW0
General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.
    
 0.862
A0A1Y2DC57
XPA protein C-terminus-domain-containing protein.
    
 0.857
Your Current Organism:
Pseudomassariella vexata
NCBI taxonomy Id: 1141098
Other names: CBS 129021, Didymella vexata, Didymosphaeria vexata, Leiosphaerella vexata, P. vexata, WU 31333
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