STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1Y2DHZ6RBR-type E3 ubiquitin transferase. (527 aa)    
Predicted Functional Partners:
A0A1Y2ED28
E3 ubiquitin-protein ligase RBX1.
    
 0.940
A0A1Y2E3V5
Ubiquitin-like protein NEDD8.
    
 0.925
A0A1Y2DBV5
Ubiquitin-conjugating enzyme/RWD-like protein.
    
 0.922
A0A1Y2E027
Ubiquitin-like domain-containing protein.
    
  0.921
A0A1Y2DU63
Polyubiquitin.
    
 0.908
A0A1Y2DI06
Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. Prx5 subfamily.
 
      0.899
A0A1Y2DI43
Nucleotide-diphospho-sugar transferase.
 
      0.886
A0A1Y2DNP9
PIPK domain-containing protein.
 
  
   0.868
A0A1Y2DPW1
CIA30 family protein.
    
 0.841
A0A1Y2DPW8
BZIP domain-containing protein.
    
 0.841
Your Current Organism:
Pseudomassariella vexata
NCBI taxonomy Id: 1141098
Other names: CBS 129021, Didymella vexata, Didymosphaeria vexata, Leiosphaerella vexata, P. vexata, WU 31333
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