A0A1Y2DLW9 protein (Pseudomassariella vexata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A1Y2DLW9

J domain-containing protein. (431 aa)

Predicted Functional Partners:

A0A1Y2DRH3

0.913

A0A1Y2EB87

0.903

A0A1Y2EBG1

0.889

A0A1Y2E681

0.879

A0A1Y2E032

0.807

A0A1Y2DUL9

0.779

A0A1Y2EBI2

0.747

A0A1Y2DD73

0.746

A0A1Y2E3V5

0.686

A0A1Y2EIY1

0.681

Your Current Organism:

Pseudomassariella vexata

NCBI taxonomy Id: 1141098
Other names: CBS 129021, Didymella vexata, Didymosphaeria vexata, Leiosphaerella vexata, P. vexata, WU 31333

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1Y2DD73	A0A1Y2DLW9	Histone acetyltransferases subunit 3-domain-containing protein.	J domain-containing protein.	0.746
A0A1Y2DD73	A0A1Y2E3V5	Histone acetyltransferases subunit 3-domain-containing protein.	Ubiquitin-like protein NEDD8.	0.583
A0A1Y2DD73	A0A1Y2EBG1	Histone acetyltransferases subunit 3-domain-containing protein.	SGF29 tudor-like domain-domain-containing protein.	0.996
A0A1Y2DLW9	A0A1Y2DD73	J domain-containing protein.	Histone acetyltransferases subunit 3-domain-containing protein.	0.746
A0A1Y2DLW9	A0A1Y2DRH3	J domain-containing protein.	Glucose-regulated protein; Belongs to the heat shock protein 70 family.	0.913
A0A1Y2DLW9	A0A1Y2DUL9	J domain-containing protein.	Heat shock protein 70 family; Belongs to the heat shock protein 70 family.	0.779
A0A1Y2DLW9	A0A1Y2E032	J domain-containing protein.	Hsp88-like protein.	0.807
A0A1Y2DLW9	A0A1Y2E3V5	J domain-containing protein.	Ubiquitin-like protein NEDD8.	0.686
A0A1Y2DLW9	A0A1Y2E681	J domain-containing protein.	DnaJ domain-containing protein.	0.879
A0A1Y2DLW9	A0A1Y2EB87	J domain-containing protein.	Uncharacterized protein.	0.903
A0A1Y2DLW9	A0A1Y2EBG1	J domain-containing protein.	SGF29 tudor-like domain-domain-containing protein.	0.889
A0A1Y2DLW9	A0A1Y2EBI2	J domain-containing protein.	Interferon-related developmental regulator-domain-containing protein.	0.747
A0A1Y2DLW9	A0A1Y2EIY1	J domain-containing protein.	Armadillo-type protein.	0.681
A0A1Y2DRH3	A0A1Y2DLW9	Glucose-regulated protein; Belongs to the heat shock protein 70 family.	J domain-containing protein.	0.913
A0A1Y2DRH3	A0A1Y2DUL9	Glucose-regulated protein; Belongs to the heat shock protein 70 family.	Heat shock protein 70 family; Belongs to the heat shock protein 70 family.	0.856
A0A1Y2DRH3	A0A1Y2E032	Glucose-regulated protein; Belongs to the heat shock protein 70 family.	Hsp88-like protein.	0.919
A0A1Y2DRH3	A0A1Y2E3V5	Glucose-regulated protein; Belongs to the heat shock protein 70 family.	Ubiquitin-like protein NEDD8.	0.474
A0A1Y2DRH3	A0A1Y2E681	Glucose-regulated protein; Belongs to the heat shock protein 70 family.	DnaJ domain-containing protein.	0.867
A0A1Y2DRH3	A0A1Y2EB87	Glucose-regulated protein; Belongs to the heat shock protein 70 family.	Uncharacterized protein.	0.953
A0A1Y2DUL9	A0A1Y2DLW9	Heat shock protein 70 family; Belongs to the heat shock protein 70 family.	J domain-containing protein.	0.779