A0A1Y2DNE2 protein (Pseudomassariella vexata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A1Y2DNE2

Uncharacterized protein. (69 aa)

Predicted Functional Partners:

A0A1Y2DUJ0

0.663

A0A1Y2DUB4

0.628

A0A1Y2E3X5

0.627

A0A1Y2EIJ0

0.625

A0A1Y2DYI1

0.624

A0A1Y2EF90

0.624

A0A1Y2E6H4

0.623

A0A1Y2EG65

0.623

A0A1Y2D8S9

0.621

A0A1Y2E578

0.619

Your Current Organism:

Pseudomassariella vexata

NCBI taxonomy Id: 1141098
Other names: CBS 129021, Didymella vexata, Didymosphaeria vexata, Leiosphaerella vexata, P. vexata, WU 31333

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1Y2D8S9	A0A1Y2DNE2	Anaphase-promoting complex subunit 5-domain-containing protein.	Uncharacterized protein.	0.621
A0A1Y2D8S9	A0A1Y2DYI1	Anaphase-promoting complex subunit 5-domain-containing protein.	Anaphase-promoting complex, subunit 10-domain-containing protein.	0.999
A0A1Y2D8S9	A0A1Y2E578	Anaphase-promoting complex subunit 5-domain-containing protein.	Cullin family protein; Belongs to the cullin family.	0.999
A0A1Y2D8S9	A0A1Y2E6H4	Anaphase-promoting complex subunit 5-domain-containing protein.	Uncharacterized protein.	0.999
A0A1Y2D8S9	A0A1Y2EF90	Anaphase-promoting complex subunit 5-domain-containing protein.	Anaphase-promoting complex component Cut20/Apc4.	0.999
A0A1Y2D8S9	A0A1Y2EIJ0	Anaphase-promoting complex subunit 5-domain-containing protein.	Anaphase-promoting complex subunit cut9.	0.999
A0A1Y2DNE2	A0A1Y2D8S9	Uncharacterized protein.	Anaphase-promoting complex subunit 5-domain-containing protein.	0.621
A0A1Y2DNE2	A0A1Y2DUB4	Uncharacterized protein.	Cdc73 family RNA pol II accessory factor.	0.628
A0A1Y2DNE2	A0A1Y2DUJ0	Uncharacterized protein.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.663
A0A1Y2DNE2	A0A1Y2DYI1	Uncharacterized protein.	Anaphase-promoting complex, subunit 10-domain-containing protein.	0.624
A0A1Y2DNE2	A0A1Y2E3X5	Uncharacterized protein.	Leo1-like protein-domain-containing protein.	0.627
A0A1Y2DNE2	A0A1Y2E578	Uncharacterized protein.	Cullin family protein; Belongs to the cullin family.	0.619
A0A1Y2DNE2	A0A1Y2E6H4	Uncharacterized protein.	Uncharacterized protein.	0.623
A0A1Y2DNE2	A0A1Y2EF90	Uncharacterized protein.	Anaphase-promoting complex component Cut20/Apc4.	0.624
A0A1Y2DNE2	A0A1Y2EG65	Uncharacterized protein.	RNA polymerase II-associated.	0.623
A0A1Y2DNE2	A0A1Y2EIJ0	Uncharacterized protein.	Anaphase-promoting complex subunit cut9.	0.625
A0A1Y2DUB4	A0A1Y2DNE2	Cdc73 family RNA pol II accessory factor.	Uncharacterized protein.	0.628
A0A1Y2DUB4	A0A1Y2E3X5	Cdc73 family RNA pol II accessory factor.	Leo1-like protein-domain-containing protein.	0.999
A0A1Y2DUB4	A0A1Y2EG65	Cdc73 family RNA pol II accessory factor.	RNA polymerase II-associated.	0.999
A0A1Y2DUJ0	A0A1Y2DNE2	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Uncharacterized protein.	0.663