STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1Y2DQX5SRP40, C-terminal domain-domain-containing protein. (508 aa)    
Predicted Functional Partners:
A0A1Y2EA53
Pre-rRNA processing nucleolar protein-like protein Sik1.
   
 
 0.985
A0A1Y2DLD7
Ribosome biogenesis protein.
   
 
 0.980
A0A1Y2EIV1
Pseudouridine synthase.
   
 
 0.971
A0A1Y2EJP1
Fibrillarin-domain-containing protein.
   
 
 0.970
A0A1Y2E006
Electron transfer flavo protein alpha-subunit.
   
   0.907
A0A1Y2DZ00
NOL1/NOP2/sun family-domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
   
   0.894
A0A1Y2DS24
P-loop containing nucleoside triphosphate hydrolase protein.
   
 
 0.890
A0A1Y2E3K8
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.890
A0A1Y2EK55
Pseudouridine synthase.
   
 
 0.887
A0A1Y2E4M5
CBF/Mak21 family-domain-containing protein.
   
   0.886
Your Current Organism:
Pseudomassariella vexata
NCBI taxonomy Id: 1141098
Other names: CBS 129021, Didymella vexata, Didymosphaeria vexata, Leiosphaerella vexata, P. vexata, WU 31333
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