A0A1Y2DU21 protein (Pseudomassariella vexata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A1Y2DU21

Uncharacterized protein. (313 aa)

Predicted Functional Partners:

A0A1Y2DY65

0.761

A0A1Y2DMV5

0.643

A0A1Y2E8T0

0.628

A0A1Y2DYF9

0.595

A0A1Y2EF81

0.586

A0A1Y2EDH6

0.547

A0A1Y2EHN4

0.544

A0A1Y2DG21

0.539

A0A1Y2DXQ9

0.539

A0A1Y2DZ32

0.539

Your Current Organism:

Pseudomassariella vexata

NCBI taxonomy Id: 1141098
Other names: CBS 129021, Didymella vexata, Didymosphaeria vexata, Leiosphaerella vexata, P. vexata, WU 31333

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1Y2DG21	A0A1Y2DU21	Cupredoxin.	Uncharacterized protein.	0.539
A0A1Y2DG21	A0A1Y2DY65	Cupredoxin.	MHYT domain-containing protein.	0.779
A0A1Y2DG21	A0A1Y2E8T0	Cupredoxin.	Uncharacterized protein.	0.535
A0A1Y2DG21	A0A1Y2EDH6	Cupredoxin.	Guanine nucleotide-binding protein subunit beta.	0.604
A0A1Y2DG21	A0A1Y2EHN4	Cupredoxin.	Putative clathrin-associated adaptor complex medium chain; Belongs to the adaptor complexes medium subunit family.	0.424
A0A1Y2DMV5	A0A1Y2DU21	Uncharacterized protein.	Uncharacterized protein.	0.643
A0A1Y2DU21	A0A1Y2DG21	Uncharacterized protein.	Cupredoxin.	0.539
A0A1Y2DU21	A0A1Y2DMV5	Uncharacterized protein.	Uncharacterized protein.	0.643
A0A1Y2DU21	A0A1Y2DXQ9	Uncharacterized protein.	Uncharacterized protein.	0.539
A0A1Y2DU21	A0A1Y2DY65	Uncharacterized protein.	MHYT domain-containing protein.	0.761
A0A1Y2DU21	A0A1Y2DYF9	Uncharacterized protein.	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	0.595
A0A1Y2DU21	A0A1Y2DZ32	Uncharacterized protein.	Cupredoxin.	0.539
A0A1Y2DU21	A0A1Y2E8T0	Uncharacterized protein.	Uncharacterized protein.	0.628
A0A1Y2DU21	A0A1Y2EDH6	Uncharacterized protein.	Guanine nucleotide-binding protein subunit beta.	0.547
A0A1Y2DU21	A0A1Y2EF81	Uncharacterized protein.	PfkB family carbohydrate kinase.	0.586
A0A1Y2DU21	A0A1Y2EHN4	Uncharacterized protein.	Putative clathrin-associated adaptor complex medium chain; Belongs to the adaptor complexes medium subunit family.	0.544
A0A1Y2DXQ9	A0A1Y2DU21	Uncharacterized protein.	Uncharacterized protein.	0.539
A0A1Y2DXQ9	A0A1Y2DY65	Uncharacterized protein.	MHYT domain-containing protein.	0.779
A0A1Y2DXQ9	A0A1Y2E8T0	Uncharacterized protein.	Uncharacterized protein.	0.633
A0A1Y2DXQ9	A0A1Y2EDH6	Uncharacterized protein.	Guanine nucleotide-binding protein subunit beta.	0.605