A0A1Y2DV42 protein (Pseudomassariella vexata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A1Y2DV42

KH domain-containing protein. (978 aa)

Predicted Functional Partners:

A0A1Y2DAN4

0.623

A0A1Y2D831

0.559

A0A1Y2DGQ7

0.547

A0A1Y2DW64

0.547

A0A1Y2EI56

0.547

A0A1Y2ELE4

0.547

A0A1Y2E9Q9

0.522

A0A1Y2EGL4

0.510

A0A1Y2EHY8

0.434

A0A1Y2EEU6

0.423

Your Current Organism:

Pseudomassariella vexata

NCBI taxonomy Id: 1141098
Other names: CBS 129021, Didymella vexata, Didymosphaeria vexata, Leiosphaerella vexata, P. vexata, WU 31333

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1Y2D831	A0A1Y2DAN4	P-loop containing nucleoside triphosphate hydrolase protein.	Guanine nucleotide-binding protein beta subunit-like protein.	0.993
A0A1Y2D831	A0A1Y2DGQ7	P-loop containing nucleoside triphosphate hydrolase protein.	Elongation factor 1-gamma; Belongs to the GST superfamily.	0.995
A0A1Y2D831	A0A1Y2DV42	P-loop containing nucleoside triphosphate hydrolase protein.	KH domain-containing protein.	0.559
A0A1Y2D831	A0A1Y2DW64	P-loop containing nucleoside triphosphate hydrolase protein.	Glutathione S-transferase; Belongs to the GST superfamily.	0.995
A0A1Y2D831	A0A1Y2E9Q9	P-loop containing nucleoside triphosphate hydrolase protein.	P-loop containing nucleoside triphosphate hydrolase protein; Belongs to the DEAD box helicase family.	0.626
A0A1Y2D831	A0A1Y2EEU6	P-loop containing nucleoside triphosphate hydrolase protein.	ThiF domain-containing protein.	0.533
A0A1Y2D831	A0A1Y2EGL4	P-loop containing nucleoside triphosphate hydrolase protein.	Elongation factor 3.	0.998
A0A1Y2D831	A0A1Y2EI56	P-loop containing nucleoside triphosphate hydrolase protein.	Uncharacterized protein.	0.995
A0A1Y2D831	A0A1Y2ELE4	P-loop containing nucleoside triphosphate hydrolase protein.	Glutathione S-transferase; Belongs to the GST superfamily.	0.995
A0A1Y2DAN4	A0A1Y2D831	Guanine nucleotide-binding protein beta subunit-like protein.	P-loop containing nucleoside triphosphate hydrolase protein.	0.993
A0A1Y2DAN4	A0A1Y2DGQ7	Guanine nucleotide-binding protein beta subunit-like protein.	Elongation factor 1-gamma; Belongs to the GST superfamily.	0.945
A0A1Y2DAN4	A0A1Y2DV42	Guanine nucleotide-binding protein beta subunit-like protein.	KH domain-containing protein.	0.623
A0A1Y2DAN4	A0A1Y2DW64	Guanine nucleotide-binding protein beta subunit-like protein.	Glutathione S-transferase; Belongs to the GST superfamily.	0.945
A0A1Y2DAN4	A0A1Y2EGL4	Guanine nucleotide-binding protein beta subunit-like protein.	Elongation factor 3.	0.995
A0A1Y2DAN4	A0A1Y2EI56	Guanine nucleotide-binding protein beta subunit-like protein.	Uncharacterized protein.	0.945
A0A1Y2DAN4	A0A1Y2ELE4	Guanine nucleotide-binding protein beta subunit-like protein.	Glutathione S-transferase; Belongs to the GST superfamily.	0.945
A0A1Y2DGQ7	A0A1Y2D831	Elongation factor 1-gamma; Belongs to the GST superfamily.	P-loop containing nucleoside triphosphate hydrolase protein.	0.995
A0A1Y2DGQ7	A0A1Y2DAN4	Elongation factor 1-gamma; Belongs to the GST superfamily.	Guanine nucleotide-binding protein beta subunit-like protein.	0.945
A0A1Y2DGQ7	A0A1Y2DV42	Elongation factor 1-gamma; Belongs to the GST superfamily.	KH domain-containing protein.	0.547
A0A1Y2DGQ7	A0A1Y2DW64	Elongation factor 1-gamma; Belongs to the GST superfamily.	Glutathione S-transferase; Belongs to the GST superfamily.	0.962