A0A1Y2DVC0 protein (Pseudomassariella vexata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A1Y2DVC0

Spindle pole body component. (757 aa)

Predicted Functional Partners:

A0A1Y2DDA7

0.998

A0A1Y2EBU3

0.998

A0A1Y2DV57

0.988

A0A1Y2E018

0.988

A0A1Y2EJJ8

0.987

A0A1Y2DYM6

0.986

A0A1Y2DJ28

0.848

A0A1Y2DQU5

0.848

A0A1Y2DSH3

0.848

A0A1Y2EIX3

0.688

Your Current Organism:

Pseudomassariella vexata

NCBI taxonomy Id: 1141098
Other names: CBS 129021, Didymella vexata, Didymosphaeria vexata, Leiosphaerella vexata, P. vexata, WU 31333

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1Y2DDA7	A0A1Y2DJ28	Spindle pole body component.	Uncharacterized protein.	0.848
A0A1Y2DDA7	A0A1Y2DQU5	Spindle pole body component.	Uncharacterized protein.	0.848
A0A1Y2DDA7	A0A1Y2DSH3	Spindle pole body component.	Uncharacterized protein.	0.848
A0A1Y2DDA7	A0A1Y2DV57	Spindle pole body component.	Spindle pole body component.	0.994
A0A1Y2DDA7	A0A1Y2DVC0	Spindle pole body component.	Spindle pole body component.	0.998
A0A1Y2DDA7	A0A1Y2DYM6	Spindle pole body component.	Mitotic-spindle organizing gamma-tubulin ring associated-domain-containing protein.	0.998
A0A1Y2DDA7	A0A1Y2E018	Spindle pole body component.	Spc98 family-domain-containing protein.	0.987
A0A1Y2DDA7	A0A1Y2EBU3	Spindle pole body component.	Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome.	0.998
A0A1Y2DDA7	A0A1Y2EIX3	Spindle pole body component.	Nucleoside diphosphate kinase.	0.604
A0A1Y2DDA7	A0A1Y2EJJ8	Spindle pole body component.	Spindle pole body component.	0.993
A0A1Y2DJ28	A0A1Y2DDA7	Uncharacterized protein.	Spindle pole body component.	0.848
A0A1Y2DJ28	A0A1Y2DVC0	Uncharacterized protein.	Spindle pole body component.	0.848
A0A1Y2DJ28	A0A1Y2EBU3	Uncharacterized protein.	Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome.	0.845
A0A1Y2DQU5	A0A1Y2DDA7	Uncharacterized protein.	Spindle pole body component.	0.848
A0A1Y2DQU5	A0A1Y2DVC0	Uncharacterized protein.	Spindle pole body component.	0.848
A0A1Y2DQU5	A0A1Y2EBU3	Uncharacterized protein.	Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome.	0.845
A0A1Y2DSH3	A0A1Y2DDA7	Uncharacterized protein.	Spindle pole body component.	0.848
A0A1Y2DSH3	A0A1Y2DVC0	Uncharacterized protein.	Spindle pole body component.	0.848
A0A1Y2DSH3	A0A1Y2EBU3	Uncharacterized protein.	Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome.	0.845
A0A1Y2DV57	A0A1Y2DDA7	Spindle pole body component.	Spindle pole body component.	0.994