STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1Y2DVQ9Uncharacterized protein. (212 aa)    
Predicted Functional Partners:
A0A1Y2EK52
DNA polymerase alpha/epsilon subunit B-domain-containing protein.
    
 0.585
A0A1Y2E346
ERCC4 domain-containing protein.
    
 0.578
A0A1Y2DY03
SMN family protein Smn1.
    
 0.573
A0A1Y2EJF8
DNA polymerase.
   
 0.567
A0A1Y2DWC5
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
  0.534
A0A1Y2E4J9
Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.
    
  0.525
A0A1Y2DFL0
Small nuclear ribonucleoprotein G.
    
  0.510
A0A1Y2EKA1
Small nuclear ribonucleoprotein Sm D2.
    
  0.508
A0A1Y2EI89
WD40-repeat-containing domain protein.
    
  0.498
A0A1Y2DMU4
DNA repair endonuclease XPF.
    
 0.494
Your Current Organism:
Pseudomassariella vexata
NCBI taxonomy Id: 1141098
Other names: CBS 129021, Didymella vexata, Didymosphaeria vexata, Leiosphaerella vexata, P. vexata, WU 31333
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