STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1Y2E0U0Uncharacterized protein. (837 aa)    
Predicted Functional Partners:
A0A1Y2DVF5
Uncharacterized protein.
   
 
 0.772
A0A1Y2DXQ4
Uncharacterized protein.
   
 
 0.772
A0A1Y2EBR9
Uncharacterized protein.
   
 
 0.772
A0A1Y2E1E8
Sister chromatid cohesion protein.
   
    0.645
A0A1Y2DFN3
Armadillo-type protein.
   
  0.633
A0A1Y2E609
Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.
    
 
 0.587
A0A1Y2DXB6
5'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. May promote termination of transcription by RNA polymerase II.
   
 
 0.552
A0A1Y2DYL3
Ribonuclease III domain-containing protein.
   
 
 0.541
A0A1Y2EEX6
Nuclear cap-binding protein subunit 2.
    
 
 0.525
A0A1Y2DD26
BRCT domain-containing protein.
    
 
 0.501
Your Current Organism:
Pseudomassariella vexata
NCBI taxonomy Id: 1141098
Other names: CBS 129021, Didymella vexata, Didymosphaeria vexata, Leiosphaerella vexata, P. vexata, WU 31333
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