A0A1Y2E3P9 protein (Pseudomassariella vexata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A1Y2E3P9

Uncharacterized protein. (964 aa)

Predicted Functional Partners:

A0A1Y2E422

0.899

A0A1Y2EJ66

0.761

A0A1Y2EIS4

0.744

A0A1Y2DIZ4

0.708

A0A1Y2DG72

0.698

A0A1Y2DE92

0.693

A0A1Y2DNR9

0.693

A0A1Y2DYB9

0.689

A0A1Y2DQ01

0.625

A0A1Y2DQM6

0.625

Your Current Organism:

Pseudomassariella vexata

NCBI taxonomy Id: 1141098
Other names: CBS 129021, Didymella vexata, Didymosphaeria vexata, Leiosphaerella vexata, P. vexata, WU 31333

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1Y2DE92	A0A1Y2E3P9	Uncharacterized protein.	Uncharacterized protein.	0.693
A0A1Y2DG72	A0A1Y2E3P9	DHS-like NAD/FAD-binding domain-containing protein.	Uncharacterized protein.	0.698
A0A1Y2DIZ4	A0A1Y2E3P9	USP domain-containing protein; Belongs to the peptidase C19 family.	Uncharacterized protein.	0.708
A0A1Y2DNR9	A0A1Y2E3P9	Chondroitin AC/alginate lyase.	Uncharacterized protein.	0.693
A0A1Y2DQ01	A0A1Y2E3P9	Helix-loop-helix DNA-binding domain-containing protein.	Uncharacterized protein.	0.625
A0A1Y2DQ01	A0A1Y2EJ66	Helix-loop-helix DNA-binding domain-containing protein.	Kinase-like domain-containing protein; Belongs to the protein kinase superfamily.	0.412
A0A1Y2DQM6	A0A1Y2E3P9	BHLH domain-containing protein.	Uncharacterized protein.	0.625
A0A1Y2DYB9	A0A1Y2E3P9	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Uncharacterized protein.	0.689
A0A1Y2E3P9	A0A1Y2DE92	Uncharacterized protein.	Uncharacterized protein.	0.693
A0A1Y2E3P9	A0A1Y2DG72	Uncharacterized protein.	DHS-like NAD/FAD-binding domain-containing protein.	0.698
A0A1Y2E3P9	A0A1Y2DIZ4	Uncharacterized protein.	USP domain-containing protein; Belongs to the peptidase C19 family.	0.708
A0A1Y2E3P9	A0A1Y2DNR9	Uncharacterized protein.	Chondroitin AC/alginate lyase.	0.693
A0A1Y2E3P9	A0A1Y2DQ01	Uncharacterized protein.	Helix-loop-helix DNA-binding domain-containing protein.	0.625
A0A1Y2E3P9	A0A1Y2DQM6	Uncharacterized protein.	BHLH domain-containing protein.	0.625
A0A1Y2E3P9	A0A1Y2DYB9	Uncharacterized protein.	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.689
A0A1Y2E3P9	A0A1Y2E422	Uncharacterized protein.	tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in mitochondrial tRNAs that read codons beginning with adenine. Probably involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37. Involved in mitochondrial genome maintenance.	0.899
A0A1Y2E3P9	A0A1Y2EIS4	Uncharacterized protein.	PLU-1-like protein-domain-containing protein.	0.744
A0A1Y2E3P9	A0A1Y2EJ66	Uncharacterized protein.	Kinase-like domain-containing protein; Belongs to the protein kinase superfamily.	0.761
A0A1Y2E422	A0A1Y2E3P9	tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in mitochondrial tRNAs that read codons beginning with adenine. Probably involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37. Involved in mitochondrial genome maintenance.	Uncharacterized protein.	0.899
A0A1Y2EIS4	A0A1Y2E3P9	PLU-1-like protein-domain-containing protein.	Uncharacterized protein.	0.744