STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1Y2E4P0Uncharacterized protein. (140 aa)    
Predicted Functional Partners:
A0A1Y2EDJ5
U1 small nuclear ribonucleo protein of 70kDa MW N terminal-domain-containing protein.
    
 
 0.888
A0A1Y2E1L7
U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.
   
 
 0.885
A0A1Y2E153
Pre-mRNA splicing factor component-domain-containing protein.
   
   0.884
A0A1Y2E0A0
Leucine-rich repeat-domain-containing protein.
    
 
 0.876
A0A1Y2E4J9
Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.
    
 
 0.845
A0A1Y2E595
Splicing factor 3B subunit 1.
   
 
 0.833
A0A1Y2EJZ2
MIF4G like-domain-containing protein.
    
 
 0.832
A0A1Y2DY29
SART-1 protein.
   
   0.819
A0A1Y2DS55
Uncharacterized protein.
    
 
 0.764
A0A1Y2D5K3
LSM domain-containing protein.
    
 
 0.720
Your Current Organism:
Pseudomassariella vexata
NCBI taxonomy Id: 1141098
Other names: CBS 129021, Didymella vexata, Didymosphaeria vexata, Leiosphaerella vexata, P. vexata, WU 31333
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