A0A1Y2EB42 protein (Pseudomassariella vexata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A1Y2EB42

Spermidine/spermine synthase; Belongs to the spermidine/spermine synthase family. (292 aa)

Predicted Functional Partners:

A0A1Y2EJF3

0.971

A0A1Y2EJA9

0.933

A0A1Y2E423

0.930

A0A1Y2DRP5

0.926

A0A1Y2EIL0

0.919

A0A1Y2E1L0

0.899

A0A1Y2DKD6

0.892

A0A1Y2E9H3

0.873

A0A1Y2EB68

0.849

A0A1Y2EFX2

0.841

Your Current Organism:

Pseudomassariella vexata

NCBI taxonomy Id: 1141098
Other names: CBS 129021, Didymella vexata, Didymosphaeria vexata, Leiosphaerella vexata, P. vexata, WU 31333

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1Y2DKD6	A0A1Y2E1L0	Ureohydrolase; Belongs to the arginase family.	Arginase family-domain-containing protein; Belongs to the arginase family.	0.651
A0A1Y2DKD6	A0A1Y2E9H3	Ureohydrolase; Belongs to the arginase family.	Arginase; Belongs to the arginase family.	0.580
A0A1Y2DKD6	A0A1Y2EB42	Ureohydrolase; Belongs to the arginase family.	Spermidine/spermine synthase; Belongs to the spermidine/spermine synthase family.	0.892
A0A1Y2DKD6	A0A1Y2EFX2	Ureohydrolase; Belongs to the arginase family.	Acetyltransferase.	0.586
A0A1Y2DKD6	A0A1Y2EJA9	Ureohydrolase; Belongs to the arginase family.	Ornithine decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family.	0.854
A0A1Y2DKD6	A0A1Y2EJF3	Ureohydrolase; Belongs to the arginase family.	Saccharopine dehydrogenase.	0.590
A0A1Y2DRP5	A0A1Y2E423	S-methyl-5'-thioadenosine phosphorylase; Catalyzes the reversible phosphorylation of S-methyl-5'- thioadenosine (MTA) to adenine and 5-methylthioribose-1-phosphate. Involved in the breakdown of MTA, a major by-product of polyamine biosynthesis. Responsible for the first step in the methionine salvage pathway after MTA has been generated from S-adenosylmethionine. Has broad substrate specificity with 6-aminopurine nucleosides as preferred substrates.	S-adenosylmethionine synthase; Catalyzes the formation of S-adenosylmethionine from methionine and ATP.	0.631
A0A1Y2DRP5	A0A1Y2EB42	S-methyl-5'-thioadenosine phosphorylase; Catalyzes the reversible phosphorylation of S-methyl-5'- thioadenosine (MTA) to adenine and 5-methylthioribose-1-phosphate. Involved in the breakdown of MTA, a major by-product of polyamine biosynthesis. Responsible for the first step in the methionine salvage pathway after MTA has been generated from S-adenosylmethionine. Has broad substrate specificity with 6-aminopurine nucleosides as preferred substrates.	Spermidine/spermine synthase; Belongs to the spermidine/spermine synthase family.	0.926
A0A1Y2DRP5	A0A1Y2EIL0	S-methyl-5'-thioadenosine phosphorylase; Catalyzes the reversible phosphorylation of S-methyl-5'- thioadenosine (MTA) to adenine and 5-methylthioribose-1-phosphate. Involved in the breakdown of MTA, a major by-product of polyamine biosynthesis. Responsible for the first step in the methionine salvage pathway after MTA has been generated from S-adenosylmethionine. Has broad substrate specificity with 6-aminopurine nucleosides as preferred substrates.	S-adenosylmethionine decarboxylase.	0.517
A0A1Y2DRP5	A0A1Y2EJA9	S-methyl-5'-thioadenosine phosphorylase; Catalyzes the reversible phosphorylation of S-methyl-5'- thioadenosine (MTA) to adenine and 5-methylthioribose-1-phosphate. Involved in the breakdown of MTA, a major by-product of polyamine biosynthesis. Responsible for the first step in the methionine salvage pathway after MTA has been generated from S-adenosylmethionine. Has broad substrate specificity with 6-aminopurine nucleosides as preferred substrates.	Ornithine decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family.	0.523
A0A1Y2DRP5	A0A1Y2EJF3	S-methyl-5'-thioadenosine phosphorylase; Catalyzes the reversible phosphorylation of S-methyl-5'- thioadenosine (MTA) to adenine and 5-methylthioribose-1-phosphate. Involved in the breakdown of MTA, a major by-product of polyamine biosynthesis. Responsible for the first step in the methionine salvage pathway after MTA has been generated from S-adenosylmethionine. Has broad substrate specificity with 6-aminopurine nucleosides as preferred substrates.	Saccharopine dehydrogenase.	0.787
A0A1Y2E1L0	A0A1Y2DKD6	Arginase family-domain-containing protein; Belongs to the arginase family.	Ureohydrolase; Belongs to the arginase family.	0.651
A0A1Y2E1L0	A0A1Y2E9H3	Arginase family-domain-containing protein; Belongs to the arginase family.	Arginase; Belongs to the arginase family.	0.573
A0A1Y2E1L0	A0A1Y2EB42	Arginase family-domain-containing protein; Belongs to the arginase family.	Spermidine/spermine synthase; Belongs to the spermidine/spermine synthase family.	0.899
A0A1Y2E1L0	A0A1Y2EFX2	Arginase family-domain-containing protein; Belongs to the arginase family.	Acetyltransferase.	0.586
A0A1Y2E1L0	A0A1Y2EJA9	Arginase family-domain-containing protein; Belongs to the arginase family.	Ornithine decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family.	0.864
A0A1Y2E1L0	A0A1Y2EJF3	Arginase family-domain-containing protein; Belongs to the arginase family.	Saccharopine dehydrogenase.	0.590
A0A1Y2E423	A0A1Y2DRP5	S-adenosylmethionine synthase; Catalyzes the formation of S-adenosylmethionine from methionine and ATP.	S-methyl-5'-thioadenosine phosphorylase; Catalyzes the reversible phosphorylation of S-methyl-5'- thioadenosine (MTA) to adenine and 5-methylthioribose-1-phosphate. Involved in the breakdown of MTA, a major by-product of polyamine biosynthesis. Responsible for the first step in the methionine salvage pathway after MTA has been generated from S-adenosylmethionine. Has broad substrate specificity with 6-aminopurine nucleosides as preferred substrates.	0.631
A0A1Y2E423	A0A1Y2E9H3	S-adenosylmethionine synthase; Catalyzes the formation of S-adenosylmethionine from methionine and ATP.	Arginase; Belongs to the arginase family.	0.593
A0A1Y2E423	A0A1Y2EB42	S-adenosylmethionine synthase; Catalyzes the formation of S-adenosylmethionine from methionine and ATP.	Spermidine/spermine synthase; Belongs to the spermidine/spermine synthase family.	0.930