STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OOA_12300COG4253 Uncharacterized protein conserved in bacteria. (109 aa)    
Predicted Functional Partners:
OOA_15300
Type VI secretion protein; COG3516 Uncharacterized protein conserved in bacteria.
 
  
 0.871
OOA_12370
COG3520 Uncharacterized protein conserved in bacteria.
 
 
  0.862
OOA_12310
Hypothetical protein.
 
    0.857
OOA_15442
COG3520 Uncharacterized protein conserved in bacteria.
 
 
  0.856
OOA_12258
COG3455 Uncharacterized protein conserved in bacteria.
 
  
 0.848
OOA_12253
COG3522 Uncharacterized protein conserved in bacteria.
 
  
 0.832
OOA_15452
Type VI secretion system lysozyme-like protein; COG3518 Uncharacterized protein conserved in bacteria.
 
  
 0.824
OOA_12375
COG3521 Uncharacterized protein conserved in bacteria.
 
  
 0.822
OOA_15432
Type VI secretion-associated protein; COG3515 Uncharacterized protein conserved in bacteria.
 
  
 0.820
OOA_15447
COG3521 Uncharacterized protein conserved in bacteria.
 
  
 0.813
Your Current Organism:
Providencia burhodogranariea
NCBI taxonomy Id: 1141662
Other names: P. burhodogranariea DSM 19968, Providencia burhodogranariea DSM 19968, Providencia burhodogranariea str. B, Providencia burhodogranariea str. DSM 19968, Providencia burhodogranariea strain DSM 19968
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.