STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kaiCPutative circadian clock protein KaiC. (514 aa)    
Predicted Functional Partners:
kaiB
Putative circadian clock protein KaiB.
 
 
 
 0.995
BAM03816.1
Putative two-component system sensor histidine kinase.
   
 
 0.730
BAM04273.1
Putative two-component system sensor histidine kinase.
   
 
 0.730
BAM02385.1
Putative two-component system sensor histidine kinase.
   
 
 0.708
BAM02398.1
UspA family protein.
   
 
 0.708
BAM02256.1
Putative two-component system sensor histidine kinase.
 
     0.646
BAM02257.1
Aldehyde dehydrogenase.
       0.508
mnmA
tRNA-specific 2-thiouridylase MnmA; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.
       0.465
Your Current Organism:
Phycisphaera mikurensis
NCBI taxonomy Id: 1142394
Other names: P. mikurensis NBRC 102666, Phycisphaera mikurensis FYK2301M01, Phycisphaera mikurensis NBRC 102666, Phycisphaera mikurensis str. NBRC 102666, Phycisphaera mikurensis strain NBRC 102666, planctomycete FYK2301M01
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.