Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| BAM05248.1 | aroC | PSMK_30890 | PSMK_07440 | Hypothetical protein. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.905 |
| BAM05248.1 | pabA | PSMK_30890 | PSMK_15700 | Hypothetical protein. | Para-aminobenzoate synthase glutamine amidotransferase component II. | 0.806 |
| BAM05248.1 | pabB | PSMK_30890 | PSMK_16470 | Hypothetical protein. | Putative para-aminobenzoate synthase component I. | 0.800 |
| BAM05248.1 | pheA | PSMK_30890 | PSMK_11990 | Hypothetical protein. | Chorismate mutase/prephenate dehydratase; Bifunctional protein; protein synonym:P-protein. | 0.915 |
| BAM05248.1 | trpE | PSMK_30890 | PSMK_02840 | Hypothetical protein. | Anthranilate synthase component I. | 0.900 |
| aroC | BAM05248.1 | PSMK_07440 | PSMK_30890 | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | Hypothetical protein. | 0.905 |
| aroC | pabA | PSMK_07440 | PSMK_15700 | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | Para-aminobenzoate synthase glutamine amidotransferase component II. | 0.890 |
| aroC | pabB | PSMK_07440 | PSMK_16470 | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | Putative para-aminobenzoate synthase component I. | 0.895 |
| aroC | pheA | PSMK_07440 | PSMK_11990 | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | Chorismate mutase/prephenate dehydratase; Bifunctional protein; protein synonym:P-protein. | 0.988 |
| aroC | trpA | PSMK_07440 | PSMK_15810 | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | Tryptophan synthase alpha chain; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family. | 0.798 |
| aroC | trpB | PSMK_07440 | PSMK_24640 | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | Tryptophan synthase beta chain; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine. | 0.561 |
| aroC | trpD | PSMK_07440 | PSMK_10650 | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | Anthranilate phosphoribosyltransferase; Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'- phosphoribosyl)-anthranilate (PRA). | 0.538 |
| aroC | trpE | PSMK_07440 | PSMK_02840 | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | Anthranilate synthase component I. | 0.939 |
| pabA | BAM05248.1 | PSMK_15700 | PSMK_30890 | Para-aminobenzoate synthase glutamine amidotransferase component II. | Hypothetical protein. | 0.806 |
| pabA | aroC | PSMK_15700 | PSMK_07440 | Para-aminobenzoate synthase glutamine amidotransferase component II. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.890 |
| pabA | pabB | PSMK_15700 | PSMK_16470 | Para-aminobenzoate synthase glutamine amidotransferase component II. | Putative para-aminobenzoate synthase component I. | 0.999 |
| pabA | pheA | PSMK_15700 | PSMK_11990 | Para-aminobenzoate synthase glutamine amidotransferase component II. | Chorismate mutase/prephenate dehydratase; Bifunctional protein; protein synonym:P-protein. | 0.897 |
| pabA | trpA | PSMK_15700 | PSMK_15810 | Para-aminobenzoate synthase glutamine amidotransferase component II. | Tryptophan synthase alpha chain; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family. | 0.969 |
| pabA | trpB | PSMK_15700 | PSMK_24640 | Para-aminobenzoate synthase glutamine amidotransferase component II. | Tryptophan synthase beta chain; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine. | 0.961 |
| pabA | trpC | PSMK_15700 | PSMK_15840 | Para-aminobenzoate synthase glutamine amidotransferase component II. | Putative indole-3-glycerol phosphate synthase; Belongs to the TrpC family. | 0.998 |
page 1 of 5