STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAM03018.1Putative oxidoreductase. (265 aa)    
Predicted Functional Partners:
BAM03017.1
Putative glycoside hydrolase.
 
     0.844
BAM02732.1
Putative oxidoreductase.
 
     0.768
BAM05132.1
Putative oxidoreductase.
 
 
 0.666
BAM04348.1
Putative oxidoreductase.
  
     0.613
BAM03200.1
Putative decarboxylase/3-oxoacyl-[acyl-carrier-protein] synthase III; Bifunctional protein.
  
 
 0.573
BAM05092.1
DeoR family transcriptional regulator.
  
    0.539
BAM03303.1
Putative oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
    0.524
BAM05246.1
Putative (3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase.
 
 
 0.503
fabD
Malonyl CoA-acyl carrier protein transacylase.
 
 0.502
BAM03019.1
Hypothetical protein.
  
    0.435
Your Current Organism:
Phycisphaera mikurensis
NCBI taxonomy Id: 1142394
Other names: P. mikurensis NBRC 102666, Phycisphaera mikurensis FYK2301M01, Phycisphaera mikurensis NBRC 102666, Phycisphaera mikurensis str. NBRC 102666, Phycisphaera mikurensis strain NBRC 102666, planctomycete FYK2301M01
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