STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAM03492.1Putative hydrolase; Belongs to the arginase family. (392 aa)    
Predicted Functional Partners:
speA
Arginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine. Belongs to the Orn/Lys/Arg decarboxylase class-II family. SpeA subfamily.
  
 
 0.938
BAM02320.1
Putative hydrolase.
  
 0.922
aguA
Protein synonym:agmatine iminohydrolase; Belongs to the agmatine deiminase family.
    
 0.917
BAM03491.1
TetR family transcriptional regulator.
  
    0.647
hypA
Hydrogenase nickel incorporation protein HypA; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase.
       0.586
BAM03488.1
ABC transporter substrate binding protein.
 
     0.565
hypB
Hydrogenase nickel incorporation protein HypB.
     
 0.558
BAM03200.1
Putative decarboxylase/3-oxoacyl-[acyl-carrier-protein] synthase III; Bifunctional protein.
     
 0.482
BAM03489.1
ABC transporter permease protein.
 
   
 0.478
BAM04553.1
Putative transporter.
  
  
 0.436
Your Current Organism:
Phycisphaera mikurensis
NCBI taxonomy Id: 1142394
Other names: P. mikurensis NBRC 102666, Phycisphaera mikurensis FYK2301M01, Phycisphaera mikurensis NBRC 102666, Phycisphaera mikurensis str. NBRC 102666, Phycisphaera mikurensis strain NBRC 102666, planctomycete FYK2301M01
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