STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAM03506.1Hypothetical protein; Belongs to the GTP cyclohydrolase I type 2/NIF3 family. (378 aa)    
Predicted Functional Partners:
hisC
Histidinol-phosphate aminotransferase; Protein synonym:imidazole acetol-phosphate transaminase.
  
  
 0.832
folK
2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase; Protein synonym:6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase; protein synonym:7, 8-dihydro-6-hydroxymethylpterin-pyrophosphokinase.
       0.807
BAM03505.1
Hypothetical protein.
       0.722
rmlB
dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
    0.598
BAM02760.1
Hypothetical protein.
  
  
 0.588
BAM03637.1
Hypothetical protein.
  
  
 0.588
hemN
Oxygen-independent coproporphyrinogen III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.
       0.525
BAM04188.1
HIT family protein.
     
 0.435
pssA
Putative CDP-diacylglycerol--serine O-phosphatidyltransferase; Protein synonym:phosphatidylserine synthase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
     
 0.426
Your Current Organism:
Phycisphaera mikurensis
NCBI taxonomy Id: 1142394
Other names: P. mikurensis NBRC 102666, Phycisphaera mikurensis FYK2301M01, Phycisphaera mikurensis NBRC 102666, Phycisphaera mikurensis str. NBRC 102666, Phycisphaera mikurensis strain NBRC 102666, planctomycete FYK2301M01
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