STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAM03922.1Putative beta-agarase. (306 aa)    
Predicted Functional Partners:
BAM04710.1
Hypothetical protein; Belongs to the glycosyl hydrolase 43 family.
 
   
 0.800
BAM04249.1
Putative esterase.
  
     0.755
BAM05087.1
Beta-agarase.
  
   
 0.754
BAM03133.1
Hypothetical protein.
  
     0.751
BAM04245.1
Putative cytochrome P450.
  
     0.750
BAM04706.1
Putative mandelate racemase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
  
     0.747
BAM04704.1
Hypothetical protein.
  
     0.732
BAM04248.1
Putative zinc-containing alcohol dehydrogenase.
  
     0.710
BAM04078.1
Putative glycoside hydrolase; Belongs to the glycosyl hydrolase 2 family.
 
     0.688
BAM04709.1
Putative zinc-containing alcohol dehydrogenase.
  
     0.657
Your Current Organism:
Phycisphaera mikurensis
NCBI taxonomy Id: 1142394
Other names: P. mikurensis NBRC 102666, Phycisphaera mikurensis FYK2301M01, Phycisphaera mikurensis NBRC 102666, Phycisphaera mikurensis str. NBRC 102666, Phycisphaera mikurensis strain NBRC 102666, planctomycete FYK2301M01
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