STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFE03427.1ATP-dependent OLD family endonuclease. (834 aa)    
Predicted Functional Partners:
AFE05046.1
WD repeat-containing protein.
 
    0.766
AFE04817.1
Hypothetical protein.
 
    0.758
AFE07171.1
Hypothetical protein.
  
     0.749
AFE03658.1
Hypothetical protein.
  
     0.729
AFE04171.1
Endonuclease/exonuclease/phosphatase.
  
     0.706
AFE07815.1
WD domain-/G-beta repeat/PBS lyase HEAT-like repeat-containing protein.
  
     0.690
AFE06273.1
DNA methylase.
 
  
 0.685
yfeS
WGR domain-containing protein.
  
     0.636
AFE05997.1
Hypothetical protein.
 
     0.626
cotH
Putative lipoprotein.
  
     0.604
Your Current Organism:
Corallococcus coralloides
NCBI taxonomy Id: 1144275
Other names: C. coralloides DSM 2259, Corallococcus coralloides ATCC 25202, Corallococcus coralloides DSM 2259, Corallococcus coralloides NBRC 100086, Corallococcus coralloides str. DSM 2259, Corallococcus coralloides strain DSM 2259
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.