STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
zraR1Sigma-54 dependent DNA-binding response regulator. (470 aa)    
Predicted Functional Partners:
dctB1
Sensor histidine kinase.
   0.853
zraS4
Sensor histidine kinase.
 
 0.788
kinE1
Sensor histidine kinase.
  
 
  0.753
zraS6
Sensor protein.
  
 0.751
zraS7
Sensor histidine kinase.
  
 
  0.745
rpoN
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.743
frgB
Sensor histidine kinase.
  
 
  0.740
mrpA
Sensor histidine kinase.
  
 
  0.722
zraS5
Periplasmic sensor signal transduction histidine kinase.
  
  0.714
fliM
Type III secretion system apparatus protein YscQ/HrcQ.
  
  
 0.712
Your Current Organism:
Corallococcus coralloides
NCBI taxonomy Id: 1144275
Other names: C. coralloides DSM 2259, Corallococcus coralloides ATCC 25202, Corallococcus coralloides DSM 2259, Corallococcus coralloides NBRC 100086, Corallococcus coralloides str. DSM 2259, Corallococcus coralloides strain DSM 2259
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.