STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFE03909.1Receptor family ligand-binding protein. (479 aa)    
Predicted Functional Partners:
braE
Putative branched chain amino acid ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.982
livH
Branched-chain amino acid ABC transporter permease LivH; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.980
livG
Branched chain amino acid ABC transporter ATP-binding protein.
 
 
 0.973
livF
Putative branched-chain amino acid ABC transporter ATP-binding protein.
 
 
 0.969
livK1
Putative branched chain amino acid ABC transporter periplasmic amino acid-binding protein.
  
  
  0.924
livK
Receptor family ligand-binding protein.
  
  
 
0.909
AFE03910.1
Hypothetical protein.
       0.773
rpmE
50S ribosomal protein L31; Binds the 23S rRNA.
  
    0.505
hisIE
phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase; In the N-terminal section; belongs to the PRA-CH family.
  
    0.495
AFE07300.1
Putative lipoprotein.
  
     0.494
Your Current Organism:
Corallococcus coralloides
NCBI taxonomy Id: 1144275
Other names: C. coralloides DSM 2259, Corallococcus coralloides ATCC 25202, Corallococcus coralloides DSM 2259, Corallococcus coralloides NBRC 100086, Corallococcus coralloides str. DSM 2259, Corallococcus coralloides strain DSM 2259
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.