STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
csdClass V aminotransferase. (379 aa)    
Predicted Functional Partners:
sufS
Cysteine desulfurase SufS; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
  
  
 
0.925
trxB
Thioredoxin-disulfide reductase.
 
 
 0.916
trxB1
Thioredoxin reductase.
  
 
 0.914
selD
Selenide, water dikinase; Synthesizes selenophosphate from selenide and ATP.
    
 0.910
AFE05363.1
FAD-dependent pyridine nucleotide-disulfide oxidoreductase.
  
 
 0.905
mdeA
Cys/Met metabolism PLP-dependent enzyme.
     
 0.901
nifU
NifU family SUF system FeS assembly protein.
 
 
 0.887
sufC
FeS assembly ATPase SufC.
  
 0.864
sufD
FeS assembly protein SufD.
 
 0.827
sufB
Cysteine desulfurase activator complex subunit SufB.
 
 0.806
Your Current Organism:
Corallococcus coralloides
NCBI taxonomy Id: 1144275
Other names: C. coralloides DSM 2259, Corallococcus coralloides ATCC 25202, Corallococcus coralloides DSM 2259, Corallococcus coralloides NBRC 100086, Corallococcus coralloides str. DSM 2259, Corallococcus coralloides strain DSM 2259
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.