STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydfGOxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (245 aa)    
Predicted Functional Partners:
mxcG
Non-ribosomal peptide synthase MxcG.
      0.906
lgrD
Linear gramicidin synthase subunit D.
 
    0.906
lgrC4
Linear gramicidin synthase subunit C.
      0.900
ybfI1
AraC family transcriptional regulator.
       0.522
bacA1
Non-ribosomal peptide synthetase/polyketide synthase.
  
  
 0.486
fabG1
Short-chain dehydrogenase/reductase.
  
    0.458
fabG8
3-oxoacyl-[ACP] reductase.
 
   
0.452
bacA
Non-ribosomal peptide synthetase.
  
  
 0.451
AFE05322.1
Long-chain-fatty-acid--CoA ligase.
  
  
 0.429
pcaC
4-carboxymuconolactone decarboxylase.
 
  
 0.410
Your Current Organism:
Corallococcus coralloides
NCBI taxonomy Id: 1144275
Other names: C. coralloides DSM 2259, Corallococcus coralloides ATCC 25202, Corallococcus coralloides DSM 2259, Corallococcus coralloides NBRC 100086, Corallococcus coralloides str. DSM 2259, Corallococcus coralloides strain DSM 2259
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.