STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rhaSAraC family transcriptional regulator. (315 aa)    
Predicted Functional Partners:
soxS
AraC family transcriptional regulator.
 
 
 0.785
soxS1
AraC family transcriptional regulator.
 
 
 0.784
ybfI1
AraC family transcriptional regulator.
 
 
 0.779
yisR
AraC family transcriptional regulator.
 
 
 0.776
alkR
AraC family transcriptional regulator.
 
 
 0.766
yidL
AraC family transcriptional regulator.
  
     0.762
ybfI
Transcriptional regulator2C AraC family.
 
 
 0.758
ykgD4
AraC family transcriptional regulator.
 
 
 0.753
ybfI2
Transcriptional regulator2C AraC family.
 
 
 0.726
ykgD3
Putative AraC-like transcription regulator.
 
 
 0.585
Your Current Organism:
Corallococcus coralloides
NCBI taxonomy Id: 1144275
Other names: C. coralloides DSM 2259, Corallococcus coralloides ATCC 25202, Corallococcus coralloides DSM 2259, Corallococcus coralloides NBRC 100086, Corallococcus coralloides str. DSM 2259, Corallococcus coralloides strain DSM 2259
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.