STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFE04594.1HEAT repeat-containing PBS lyase. (316 aa)    
Predicted Functional Partners:
AFE04595.1
Hypothetical protein.
 
     0.803
AFE06282.1
HEAT repeat-containing PBS lyase.
  
     0.769
AFE05652.1
HEAT repeat-containing PBS lyase.
  
     0.755
AFE07270.1
TPR repeat-containing protein.
  
    0.745
AFE03551.1
Hypothetical protein.
  
     0.742
AFE03989.1
HEAT repeat-containing PBS lyase.
  
     0.741
AFE04748.1
HEAT repeat-containing PBS lyase.
  
     0.735
AFE06909.1
Hypothetical protein.
  
 
   0.734
AFE05385.1
B12-binding domain-containing protein.
  
     0.712
AFE05276.1
Hypothetical protein.
  
     0.696
Your Current Organism:
Corallococcus coralloides
NCBI taxonomy Id: 1144275
Other names: C. coralloides DSM 2259, Corallococcus coralloides ATCC 25202, Corallococcus coralloides DSM 2259, Corallococcus coralloides NBRC 100086, Corallococcus coralloides str. DSM 2259, Corallococcus coralloides strain DSM 2259
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.