STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mrpBSigma-54 dependent DNA-binding response regulator. (488 aa)    
Predicted Functional Partners:
mrpA
Sensor histidine kinase.
 
 
 
 0.871
rpoN
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.760
fliM
Type III secretion system apparatus protein YscQ/HrcQ.
  
  
 0.712
AFE06768.1
Type III secretion system apparatus protein YscQ/HrcQ.
  
  
 0.712
mrpC
Transcriptional regulator MrpC.
   
 
 0.631
speE2
Spermine/spermidine synthase family protein; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine.
       0.562
cheA3
Sensor histidine kinase/response regulator.
  
 
 0.515
frzE2
Chemotaxis sensor histidine kinase/response regulator.
  
 
 0.515
frzE3
Sensor histidine kinase/response regulator.
  
 
 0.515
fixL4
Sensory box histidine kinase/response regulator.
 
 
 0.500
Your Current Organism:
Corallococcus coralloides
NCBI taxonomy Id: 1144275
Other names: C. coralloides DSM 2259, Corallococcus coralloides ATCC 25202, Corallococcus coralloides DSM 2259, Corallococcus coralloides NBRC 100086, Corallococcus coralloides str. DSM 2259, Corallococcus coralloides strain DSM 2259
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.