STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFE04651.1Type I phosphodiesterase/nucleotide pyrophosphatase family protein. (530 aa)    
Predicted Functional Partners:
ybhP
Endonuclease/exonuclease/phosphatase.
     0.885
AFE06974.1
Putative lipoprotein.
  
     0.750
AFE06445.1
TPR repeat-containing protein.
  
     0.731
AFE06226.1
Putative lipoprotein.
  
     0.722
AFE04652.1
Hypothetical protein.
       0.721
AFE06368.1
Putative lipoprotein.
  
     0.713
aglU
Adventurous gliding motility protein AglU.
  
     0.700
AFE05276.1
Hypothetical protein.
  
    0.666
AFE06937.1
Hypothetical protein.
  
     0.666
AFE05652.1
HEAT repeat-containing PBS lyase.
  
     0.652
Your Current Organism:
Corallococcus coralloides
NCBI taxonomy Id: 1144275
Other names: C. coralloides DSM 2259, Corallococcus coralloides ATCC 25202, Corallococcus coralloides DSM 2259, Corallococcus coralloides NBRC 100086, Corallococcus coralloides str. DSM 2259, Corallococcus coralloides strain DSM 2259
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.