STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
inlALeucine-rich repeat-containing protein. (614 aa)    
Predicted Functional Partners:
spaB
Lanthionine biosynthesis protein LanB.
       0.773
carF
Carotenoid synthesis regulator CarF.
  
     0.613
rnz1
Ribonuclease Z family protein.
  
     0.594
AFE05248.1
Hypothetical protein.
  
     0.579
AFE03395.1
Tat pathway signal sequence domain-containing protein.
  
     0.567
AFE03396.1
Hypothetical protein.
  
 
   0.564
AFE05136.1
Hypothetical protein.
       0.559
surE2
HAD family hydrolase 5-nucleotidase.
  
     0.546
AFE05750.1
HAD family hydrolase 5-nucleotidase.
  
     0.534
AFE06910.1
Flagellar hook-length control protein.
  
 
   0.519
Your Current Organism:
Corallococcus coralloides
NCBI taxonomy Id: 1144275
Other names: C. coralloides DSM 2259, Corallococcus coralloides ATCC 25202, Corallococcus coralloides DSM 2259, Corallococcus coralloides NBRC 100086, Corallococcus coralloides str. DSM 2259, Corallococcus coralloides strain DSM 2259
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