STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yebA4M23 peptidase domain-containing protein. (343 aa)    
Predicted Functional Partners:
AFE06316.1
M23 peptidase domain-containing protein.
  
   
 0.766
yebA1
M23 peptidase domain-containing protein.
  
   
 0.760
ygeR
Cell wall endopeptidase.
  
     0.756
yebA8
M23 peptidase domain-containing protein.
  
     0.756
yibP
M23 peptidase domain-containing protein.
 
   
 0.744
atoC7
Sigma-54 dependent DNA-binding response regulator.
   
 
 0.732
AFE05864.1
Hypothetical protein.
     
 0.710
AFE05863.1
Hypothetical protein.
     
 0.676
fliM
Type III secretion system apparatus protein YscQ/HrcQ.
  
 
 0.525
mrcA1
1A family penicillin-binding protein.
  
   
 0.488
Your Current Organism:
Corallococcus coralloides
NCBI taxonomy Id: 1144275
Other names: C. coralloides DSM 2259, Corallococcus coralloides ATCC 25202, Corallococcus coralloides DSM 2259, Corallococcus coralloides NBRC 100086, Corallococcus coralloides str. DSM 2259, Corallococcus coralloides strain DSM 2259
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.