STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ppiB1Peptidyl-prolyl cis-trans isomerase. (698 aa)    
Predicted Functional Partners:
pksJ
Putative non-ribosomal peptide synthetase.
  
 
 0.935
htpG
Heat shock protein 90; Molecular chaperone. Has ATPase activity.
 
 0.723
bacA1
Non-ribosomal peptide synthetase/polyketide synthase.
  
 
 0.720
AFE05697.1
Long-chain-fatty-acid--CoA ligase.
  
 
 0.720
AFE05825.1
Hypothetical protein.
  
 0.713
pcbAB
Long-chain-fatty-acid--CoA ligase.
  
 
 0.700
lgrC2
Non-ribosomal peptide synthase.
  
 
 0.698
nuoH
Putative NADH dehydrogenase I subunit H; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone.
   
   0.682
htpG1
HSP90 family protein.
  
 0.681
ppsC
Malonyl CoA-acyl carrier protein transacylase.
  
 
 0.673
Your Current Organism:
Corallococcus coralloides
NCBI taxonomy Id: 1144275
Other names: C. coralloides DSM 2259, Corallococcus coralloides ATCC 25202, Corallococcus coralloides DSM 2259, Corallococcus coralloides NBRC 100086, Corallococcus coralloides str. DSM 2259, Corallococcus coralloides strain DSM 2259
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