STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
flhBFlhB/HrpN/YscU/SpaS family protein. (93 aa)    
Predicted Functional Partners:
fliM
Type III secretion system apparatus protein YscQ/HrcQ.
 
  
 0.994
fliR
FliR/MopE/SpaR family protein.
 
 
 0.991
fliQ
FliQ/MopD/SpaQ family protein; Role in flagellar biosynthesis. Belongs to the FliQ/MopD/SpaQ family.
 
 
 0.986
yscN
FliI/YscN family ATPase.
 
 
 0.963
AFE06768.1
Type III secretion system apparatus protein YscQ/HrcQ.
  
  
 0.960
fliQ1
Putative type III secretion system protein.
 
 
 0.955
fliP
Type III secretion system protein.
 
 
 0.952
AFE06485.1
Hypothetical protein.
  
  
 0.915
fliA
FliA/WhiG family RNA polymerase sigma factor; Belongs to the sigma-70 factor family.
 
  
 0.887
lcrD
Type III secretion protein LcrD/AscV.
 
 
 0.861
Your Current Organism:
Corallococcus coralloides
NCBI taxonomy Id: 1144275
Other names: C. coralloides DSM 2259, Corallococcus coralloides ATCC 25202, Corallococcus coralloides DSM 2259, Corallococcus coralloides NBRC 100086, Corallococcus coralloides str. DSM 2259, Corallococcus coralloides strain DSM 2259
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.