STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yscJYscJ/HrcJ family type III secretion apparatus lipoprotein. (272 aa)    
Predicted Functional Partners:
AFE06766.1
FliR/MopE/SpaR family exporter.
 
 
 0.947
nolT
YscJ/FliF family type III secretion lipoprotein.
  
  
 
0.927
fliP
Type III secretion system protein.
 
 
 0.924
AFE06488.1
FliH family protein.
 
  
 0.909
fliP1
Type III secretion system protein.
 
 
 0.902
lcrD
Type III secretion protein LcrD/AscV.
 
 
 0.898
lcrD1
FHIPEP family type III secretion protein.
 
 
 0.876
yscN
FliI/YscN family ATPase.
 
  
 0.863
gspD
General secretion pathway protein D.
  
 
 0.838
AFE06492.1
TPR domain-containing protein.
  
    0.818
Your Current Organism:
Corallococcus coralloides
NCBI taxonomy Id: 1144275
Other names: C. coralloides DSM 2259, Corallococcus coralloides ATCC 25202, Corallococcus coralloides DSM 2259, Corallococcus coralloides NBRC 100086, Corallococcus coralloides str. DSM 2259, Corallococcus coralloides strain DSM 2259
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