STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFE06492.1TPR domain-containing protein. (144 aa)    
Predicted Functional Partners:
yscJ
YscJ/HrcJ family type III secretion apparatus lipoprotein.
  
    0.818
nolT
YscJ/FliF family type III secretion lipoprotein.
  
    0.693
fliA
FliA/WhiG family RNA polymerase sigma factor; Belongs to the sigma-70 factor family.
       0.689
AFE06491.1
Hypothetical protein.
       0.689
AFE06490.1
YscI/HrpB family type III secretion apparatus protein.
       0.634
fliP
Type III secretion system protein.
  
    0.567
AFE06493.1
Hypothetical protein.
       0.533
AFE06766.1
FliR/MopE/SpaR family exporter.
  
    0.504
gspD
General secretion pathway protein D.
  
  
 0.500
fliP1
Type III secretion system protein.
  
    0.496
Your Current Organism:
Corallococcus coralloides
NCBI taxonomy Id: 1144275
Other names: C. coralloides DSM 2259, Corallococcus coralloides ATCC 25202, Corallococcus coralloides DSM 2259, Corallococcus coralloides NBRC 100086, Corallococcus coralloides str. DSM 2259, Corallococcus coralloides strain DSM 2259
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