STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pilMType IV pilus assembly protein PilM. (360 aa)    
Predicted Functional Partners:
pilN
Type IV pilus biogenesis protein PilN.
 
 
 0.997
pilO
Type IV pilus biogenesis protein PilO.
 
 
 0.995
pilQ
Type IV pilus secretin PilQ.
 
 
 0.994
pilP
Putative lipoprotein.
 
 
 0.978
pilC
Type 4 fimbrial assembly protein PilC.
 
 
 
 0.977
AFE06169.1
LysM domain-containing protein.
  
 
   0.915
pilB
Type IV-A pilus assembly ATPase PilB.
 
 
 
 0.914
nfrB2
General secretion pathway protein E.
 
 
 
 0.881
pilD
Prepilin peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
  
 0.872
pilA
Pilin.
 
   
 0.864
Your Current Organism:
Corallococcus coralloides
NCBI taxonomy Id: 1144275
Other names: C. coralloides DSM 2259, Corallococcus coralloides ATCC 25202, Corallococcus coralloides DSM 2259, Corallococcus coralloides NBRC 100086, Corallococcus coralloides str. DSM 2259, Corallococcus coralloides strain DSM 2259
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.