STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFE07158.1Hypothetical protein. (973 aa)    
Predicted Functional Partners:
rhiB
Protein rhiB.
       0.788
wcaA1
Glycosyltransferase.
       0.664
comEC
DNA internalization-related competence protein.
  
  
 0.595
gspK
Putative general secretory pathway protein K.
  
 
 0.578
gspF
General secretion pathway protein F.
  
  
 0.569
pilC
Type 4 fimbrial assembly protein PilC.
  
  
 0.569
dprA
DNA processing chain A.
  
  
 0.527
frgA
FrgA protein.
  
 
 0.521
nfrB
General secretion pathway protein E.
  
 
 0.521
AFE05167.1
General secretion pathway protein E.
  
 
 0.521
Your Current Organism:
Corallococcus coralloides
NCBI taxonomy Id: 1144275
Other names: C. coralloides DSM 2259, Corallococcus coralloides ATCC 25202, Corallococcus coralloides DSM 2259, Corallococcus coralloides NBRC 100086, Corallococcus coralloides str. DSM 2259, Corallococcus coralloides strain DSM 2259
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.