STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFE07564.1Hypothetical protein. (499 aa)    
Predicted Functional Partners:
phoP5
Alkaline phosphatase synthesis transcriptional regulatory protein.
       0.780
bphB
Sensor protein.
 
 
 
 0.582
aphA
Cyanobacterial phytochrome A.
 
 
 
 0.579
cph1A
PAS/PAC sensor signal transduction histidine kinase.
 
 
 
 0.541
cph1B
Phytochrome-like protein cph1.
 
 
 
 0.497
AFE07563.1
Hypothetical protein.
       0.467
AFE07565.1
Hypothetical protein.
       0.459
gacS3
Sensor histidine kinase/response regulator.
 
   
 0.440
rpfC1
Sensory/regulatory protein RpfC.
 
   
 0.402
Your Current Organism:
Corallococcus coralloides
NCBI taxonomy Id: 1144275
Other names: C. coralloides DSM 2259, Corallococcus coralloides ATCC 25202, Corallococcus coralloides DSM 2259, Corallococcus coralloides NBRC 100086, Corallococcus coralloides str. DSM 2259, Corallococcus coralloides strain DSM 2259
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.