STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFE07830.1Hypothetical protein. (401 aa)    
Predicted Functional Partners:
AFE07829.1
AAA family ATPase.
 
    0.946
clpB1
AAA family ATPase.
 
    0.696
aidB
acyl-CoA dehydrogenase family protein.
  
     0.632
aidB2
acyl-CoA dehydrogenase.
  
     0.617
vegA1
Vegetative protein.
       0.520
tkt
Transketolase; Belongs to the transketolase family.
       0.495
AFE06993.1
Alpha/beta fold family hydrolase.
  
     0.429
yigI
Thioesterase family protein.
  
     0.401
Your Current Organism:
Corallococcus coralloides
NCBI taxonomy Id: 1144275
Other names: C. coralloides DSM 2259, Corallococcus coralloides ATCC 25202, Corallococcus coralloides DSM 2259, Corallococcus coralloides NBRC 100086, Corallococcus coralloides str. DSM 2259, Corallococcus coralloides strain DSM 2259
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.