STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFE07896.1Hypothetical protein. (521 aa)    
Predicted Functional Partners:
wcaJ1
Sugar transferase.
  
  
 0.770
cpsE
Sugar transferase.
  
  
 0.770
wcaL1
Group 1 glycosyl transferase.
  
  
 0.601
epsC
Putative polysaccharide biosynthesis protein epsC.
  
  
 0.525
AFE07893.1
Hypothetical protein.
       0.522
AFE07894.1
Hypothetical protein.
       0.522
AFE07895.1
Putative lipoprotein.
       0.522
wcaJ
Sugar transferase.
  
  
 0.499
epsL
Undecaprenyl-phosphate galactose phosphotransferase.
  
  
 0.499
rfbC1
Glycosyl transferase family protein.
  
  
 0.435
Your Current Organism:
Corallococcus coralloides
NCBI taxonomy Id: 1144275
Other names: C. coralloides DSM 2259, Corallococcus coralloides ATCC 25202, Corallococcus coralloides DSM 2259, Corallococcus coralloides NBRC 100086, Corallococcus coralloides str. DSM 2259, Corallococcus coralloides strain DSM 2259
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.