STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PS3_12080Integral membrane protein. (360 aa)    
Predicted Functional Partners:
PS3_4079
Permease.
  
     0.587
PS3_19332
Transport protein.
  
     0.505
PS3_9427
Alpha/beta fold family hydrolase.
  
     0.448
PS3_13431
Acyltransferase 3.
      
 0.447
PS3_15776
Integrase; Belongs to the 'phage' integrase family.
  
     0.437
PS3_16201
Hypothetical protein.
  
     0.428
PS3_3752
Amino acid transporter.
       0.422
PS3_7158
Immunity protein PlnI.
 
     0.417
PS3_19993
Integrase; Belongs to the 'phage' integrase family.
  
     0.412
PS3_21948
Hypothetical protein.
 
   
 0.404
Your Current Organism:
Lactobacillus gastricus
NCBI taxonomy Id: 1144300
Other names: L. gastricus PS3, Lactobacillus gastricus PS3, Lactobacillus gastricus str. PS3, Lactobacillus gastricus strain PS3
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.