STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PS3_13741Alkaline phosphatase superfamily protein. (710 aa)    
Predicted Functional Partners:
PS3_5704
Phosphoglycerol transferase.
  
 
 
0.909
PS3_5720
Glycosyltransferase.
    
 0.863
PS3_19147
Hypothetical protein.
  
     0.667
PS3_10989
UPF0346 protein; Belongs to the UPF0346 family.
  
     0.653
PS3_5994
Phosphoglycerate mutase.
       0.548
PS3_8063
Lipolytic protein G-D-S-L family protein.
 
     0.546
PS3_13430
Peptidase propeptide and ypeb domain-containing protein.
  
     0.544
PS3_18361
Hypothetical protein.
  
     0.530
PS3_15347
TPR repeat-containing protein.
 
     0.521
PS3_12886
UPF0398 protein ypsA.
  
     0.513
Your Current Organism:
Lactobacillus gastricus
NCBI taxonomy Id: 1144300
Other names: L. gastricus PS3, Lactobacillus gastricus PS3, Lactobacillus gastricus str. PS3, Lactobacillus gastricus strain PS3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.