PS3_15064 protein (Lactobacillus gastricus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PS3_15064

Multidrug ABC transporter ATP-binding and permease component. (610 aa)

Predicted Functional Partners:

PS3_6163

0.986

PS3_12407

0.944

PS3_19617

0.852

PS3_19858

0.852

PS3_13589

0.594

PS3_3357

0.560

PS3_5952

0.539

PS3_4234

0.520

PS3_4235

0.487

PS3_4600

0.465

Your Current Organism:

Lactobacillus gastricus

NCBI taxonomy Id: 1144300
Other names: L. gastricus PS3, Lactobacillus gastricus PS3, Lactobacillus gastricus str. PS3, Lactobacillus gastricus strain PS3

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
PS3_12407	PS3_15064	Multidrug resistance ABC superfamily ATP binding cassette transporter, ABC/membrane protein.	Multidrug ABC transporter ATP-binding and permease component.	0.944
PS3_12407	PS3_19858	Multidrug resistance ABC superfamily ATP binding cassette transporter, ABC/membrane protein.	Lactacin F ABC transporter permease component.	0.845
PS3_12407	PS3_4234	Multidrug resistance ABC superfamily ATP binding cassette transporter, ABC/membrane protein.	Polyketide transporter ATPase component.	0.522
PS3_12407	PS3_4235	Multidrug resistance ABC superfamily ATP binding cassette transporter, ABC/membrane protein.	Polyketide transporter ATPase component.	0.535
PS3_12407	PS3_4600	Multidrug resistance ABC superfamily ATP binding cassette transporter, ABC/membrane protein.	Rhodanese domain-containing protein.	0.465
PS3_13589	PS3_15064	Putative esterase.	Multidrug ABC transporter ATP-binding and permease component.	0.594
PS3_13589	PS3_3357	Putative esterase.	Cardiolipin synthase; Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol.	0.774
PS3_13589	PS3_6163	Putative esterase.	Multidrug ABC transporter ATP-binding and permease component.	0.602
PS3_15064	PS3_12407	Multidrug ABC transporter ATP-binding and permease component.	Multidrug resistance ABC superfamily ATP binding cassette transporter, ABC/membrane protein.	0.944
PS3_15064	PS3_13589	Multidrug ABC transporter ATP-binding and permease component.	Putative esterase.	0.594
PS3_15064	PS3_19617	Multidrug ABC transporter ATP-binding and permease component.	ABC transporter ATP-binding protein.	0.852
PS3_15064	PS3_19858	Multidrug ABC transporter ATP-binding and permease component.	Lactacin F ABC transporter permease component.	0.852
PS3_15064	PS3_3357	Multidrug ABC transporter ATP-binding and permease component.	Cardiolipin synthase; Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol.	0.560
PS3_15064	PS3_4234	Multidrug ABC transporter ATP-binding and permease component.	Polyketide transporter ATPase component.	0.520
PS3_15064	PS3_4235	Multidrug ABC transporter ATP-binding and permease component.	Polyketide transporter ATPase component.	0.487
PS3_15064	PS3_4600	Multidrug ABC transporter ATP-binding and permease component.	Rhodanese domain-containing protein.	0.465
PS3_15064	PS3_5952	Multidrug ABC transporter ATP-binding and permease component.	ABC superfamily ATP binding cassette transporter, ABC protein.	0.539
PS3_15064	PS3_6163	Multidrug ABC transporter ATP-binding and permease component.	Multidrug ABC transporter ATP-binding and permease component.	0.986
PS3_19617	PS3_15064	ABC transporter ATP-binding protein.	Multidrug ABC transporter ATP-binding and permease component.	0.852
PS3_19617	PS3_19858	ABC transporter ATP-binding protein.	Lactacin F ABC transporter permease component.	0.620