STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PS3_18929Hypothetical protein. (261 aa)    
Predicted Functional Partners:
PS3_14590
Hypothetical protein.
 
  
 0.979
PS3_4572
Two-component sensor histidine kinase.
 
  
 0.932
PS3_2741
Beta-lactamase superfamily I metal-dependent hydrolase.
  
  
 0.908
PS3_15025
Two-component system response regulator.
     
 0.853
PS3_13012
Serine protease.
  
  
 0.776
PS3_13226
Cystathionine beta-synthase (CBS) domain protein.
  
     0.680
PS3_13430
Peptidase propeptide and ypeb domain-containing protein.
  
     0.667
prsA
Peptidylprolyl isomerase; Plays a major role in protein secretion by helping the post- translocational extracellular folding of several secreted proteins.
  
     0.649
PS3_4118
Hypothetical protein.
  
     0.636
PS3_4098
Integral membrane protein.
  
     0.597
Your Current Organism:
Lactobacillus gastricus
NCBI taxonomy Id: 1144300
Other names: L. gastricus PS3, Lactobacillus gastricus PS3, Lactobacillus gastricus str. PS3, Lactobacillus gastricus strain PS3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.