STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PS3_19996Glutamine ABC transporter ATP-binding component. (242 aa)    
Predicted Functional Partners:
PS3_20481
Glutamine ABC transporter, glutamine-binding protein/permease protein.
 0.998
PS3_3548
Amino acid ABC superfamily ATP binding cassette transporter, membrane protein.
 0.992
PS3_9847
Hypothetical protein; HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain (COG0834); HisM, ABC-type amino acid transport system, permiease component (COG0765); Lr1198.
 0.992
PS3_16319
Transport system membrane protein.
 0.990
PS3_6141
Glutamine ABC transporter permease component.
 0.988
PS3_20421
Amino acid ABC transporter permease component.
 0.964
PS3_4234
Polyketide transporter ATPase component.
 
  
 
0.912
PS3_18011
ABC transporter ATP-binding membrane protein.
 
    
0.904
PS3_6163
Multidrug ABC transporter ATP-binding and permease component.
 
     
0.900
PS3_5949
Amino acid ABC superfamily ATP binding cassette transporter, binding protein; Belongs to the bacterial solute-binding protein 3 family.
 0.766
Your Current Organism:
Lactobacillus gastricus
NCBI taxonomy Id: 1144300
Other names: L. gastricus PS3, Lactobacillus gastricus PS3, Lactobacillus gastricus str. PS3, Lactobacillus gastricus strain PS3
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