STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PS3_9218Transcriptional regulator. (136 aa)    
Predicted Functional Partners:
PS3_4087
SAM-dependent methyltransferase.
 
     0.898
PS3_14858
Competence/damage-inducible protein A; Belongs to the CinA family.
    
 0.888
PS3_7113
Hypothetical protein.
   
 
 0.858
PS3_18913
Hypothetical protein.
  
     0.771
PS3_16408
Hypothetical protein.
  
     0.767
PS3_13734
Hypothetical protein.
  
     0.765
PS3_7787
Tetratricopeptide TPR_2 repeat protein.
  
  
 0.758
PS3_13757
Hypothetical protein.
  
     0.749
PS3_18568
Hypothetical protein.
  
     0.734
PS3_4770
Hypothetical protein.
 
     0.723
Your Current Organism:
Lactobacillus gastricus
NCBI taxonomy Id: 1144300
Other names: L. gastricus PS3, Lactobacillus gastricus PS3, Lactobacillus gastricus str. PS3, Lactobacillus gastricus strain PS3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.