STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mnmAtRNA-specific 2-thiouridylase mnmA; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34. (398 aa)    
Predicted Functional Partners:
mnmG
tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family.
 
 0.862
mnmE
tRNA modification GTPase mnmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.
 
 0.858
EUB96768.1
PFAM: protein of unknown function DUF752; KEGG: hypothetical protein.
    
 0.760
EUB95653.1
Cysteine desulfurase; KEGG: class V aminotransferase; PFAM: aminotransferase class V.
 
 
 0.731
EUB94999.1
TIGRFAM: riboflavin biosynthesis protein RibD; KEGG: ribD, diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-5-phosphoribosylamino uracil reductase; PFAM: CMP/dCMP deaminase zinc-binding protein, bifunctional deaminase-reductase domain protein.
 
  
 0.689
aspS
Aspartyl-tRNA synthetase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily.
 
  
 0.636
EUC01422.1
SMART: Riboflavin kinase; TIGRFAM: riboflavin biosynthesis protein RibF, cytidyltransferase-related domain protein; KEGG: ribF, bifunctional riboflavin kinase/FMN adenylyltransferase; PFAM: FAD synthetase, Riboflavin kinase; Belongs to the ribF family.
  
 
  0.609
EUB99373.1
FAD synthetase; KEGG: ribF, riboflavin kinase and FAD synthetase; PFAM: FAD synthetase.
  
 
  0.609
pheT
TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit; KEGG: pheT, phenylalanyl-tRNA synthetase beta chain; HAMAP : Phenylalanyl-tRNA synthetase beta chain; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
 
  
 0.598
EUB96953.1
KEGG: papS, tRNA nucleotidyltransferase; PFAM: Polynucleotide adenylyltransferase region; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
 
  
 0.583
Your Current Organism:
Rhizobium sp. CF080
NCBI taxonomy Id: 1144310
Other names: R. sp. CF080
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