STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EUC01344.1KEGG: hemolysin A; PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ, RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein. (254 aa)    
Predicted Functional Partners:
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
  
 0.804
EUC01345.1
PFAM: (Uracil-5)-methyltransferase; KEGG: RNA methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
  
  
 0.800
dxs
1-deoxy-D-xylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily.
 
    0.727
nadK
NAD(+) kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.
  
  
 0.668
ffh
Signal recognition 54 kDa protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components [...]
 
    0.549
EUC01343.1
KEGG: methyl-accepting chemotaxis protein; PFAM: chemotaxis sensory transducer, CHASE3 domain protein, histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer, histidine kinase HAMP region domain protein.
       0.547
ftsA
Cell division protein FtsA; Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring. Belongs to the FtsA/MreB family.
   
  
 0.500
pheT
TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit; KEGG: pheT, phenylalanyl-tRNA synthetase beta chain; HAMAP : Phenylalanyl-tRNA synthetase beta chain; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
     
 0.484
hisS
Histidyl-tRNA synthetase; PFAM: Anticodon-binding domain protein; TIGRFAM: histidyl-tRNA synthetase; HAMAP : Histidyl-tRNA synthetase; KEGG: hisS, histidyl-tRNA synthetase.
  
  
 0.481
EUB94901.1
Beta-lactamase domain protein; KEGG: metal dependent hydrolase; PFAM: beta-lactamase domain protein, RNA-metabolising metallo-beta-lactamase; SMART: beta-lactamase domain protein.
 
     0.439
Your Current Organism:
Rhizobium sp. CF080
NCBI taxonomy Id: 1144310
Other names: R. sp. CF080
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